Calculation of Protein Domain Structural Similarity Using Two-Dimensional Representations.

Two Dimensional Structural Analysis and Expression of a New Staphylococcus aureus Adhesin Based Fusion Protein

Objective(s) Staphylococcus aureus is a foremost source of numerous nosocomial and community acquired infections. Antibiotic therapy for vancomycin resistant S. aureus (VRSA) can not promise the eradication of infections. Since adhesion is the major route of infections, adhesin based vaccine could suppress S. aureus infections. Fibronectin binding protein A (FnBPA) and clumping factor A (ClfA)...

STATISTICAL-MECHANICAL CALCULATION OF THERMODYNAMIC PROPERTIES OF ALBITE USING A TWO-DIMENSIONAL MODEL

Sentence Similarity on Structural Representations

Most previous approaches used various kinds of plain similarity features to represent the similarity of a sentence pair, and one of its limitations is its weak representation ability. This paper introduces the relational structures representation (shallow syntactic tree, dependency tree) to compute sentence similarity. Experimental results manifest that our approach achieves higher performance ...

JVirGel: calculation of virtual two-dimensional protein gels

We developed JVirGel, a collection of tools for the simulation and analysis of proteomics data. The software creates and visualizes virtual two-dimensional (2D) protein gels based on the migration behaviour of proteins in dependence of their theoretical molecular weights in combination with their calculated isoelectric points. The utilization of all proteins of an organism of interest deduced f...

Learning Semantic Textual Similarity with Structural Representations

Measuring semantic textual similarity (STS) is at the cornerstone of many NLP applications. Different from the majority of approaches, where a large number of pairwise similarity features are used to represent a text pair, our model features the following: (i) it directly encodes input texts into relational syntactic structures; (ii) relies on tree kernels to handle feature engineering automati...